.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.3.
.TH CNVKIT_SEX "1" "July 2023" "cnvkit.py sex 0.9.10" "User Commands"
.SH NAME
cnvkit_sex \- Guess samples' sex from the relative coverage of chromosomes X and Y.
.SH DESCRIPTION
usage: cnvkit.py sex [\-h] [\-y] [\-o FILENAME] filenames [filenames ...]
.SS "positional arguments:"
.TP
filenames
Copy number or copy ratio files (*.cnn, *.cnr).
.SS "options:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-y\fR, \fB\-\-male\-reference\fR, \fB\-\-haploid\-x\-reference\fR
Assume inputs were normalized to a male reference
(i.e. female samples will have +1 log\-coverage of
chrX; otherwise male samples would have \fB\-1\fR chrX).
.TP
\fB\-o\fR FILENAME, \fB\-\-output\fR FILENAME
Output table file name.