.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.3.
.TH CNVKIT_ANTITARGET "1" "July 2023" "cnvkit.py antitarget 0.9.10" "User Commands"
.SH NAME
cnvkit_antitarget \- Derive off-target ("antitarget") bins from target regions.
.SH DESCRIPTION
usage: cnvkit.py antitarget [\-h] [\-g FILENAME] [\-a AVG_SIZE] [\-m MIN_SIZE]
.TP
[\-o FILENAME]
targets
.SS "positional arguments:"
.TP
targets
BED or interval file listing the targeted regions.
.SS "options:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-g\fR FILENAME, \fB\-\-access\fR FILENAME
Regions of accessible sequence on chromosomes (.bed),
as output by genome2access.py.
.TP
\fB\-a\fR AVG_SIZE, \fB\-\-avg\-size\fR AVG_SIZE
Average size of antitarget bins (results are
approximate). [Default: 150000]
.TP
\fB\-m\fR MIN_SIZE, \fB\-\-min\-size\fR MIN_SIZE
Minimum size of antitarget bins (smaller regions are
dropped). [Default: 1/16 avg size, calculated]
.TP
\fB\-o\fR FILENAME, \fB\-\-output\fR FILENAME
Output file name.