table of contents
| probe(1) | The Computational Morphometry Toolkit | probe(1) |
NAME¶
probe - Probe image data.
SYNOPSIS¶
probe InputImage
DESCRIPTION¶
This tool prints pixel values or symbolic labels at a list of user-provided image coordinates.
OPTIONS¶
Global Toolkit Options (these are shared by all CMTK tools)¶
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard output.
- --wiki
- Write list of command line options to standard output in MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options¶
- --coordinates
- Coordinate specification mode. Supported values: "absolute", "indexed", "relative", "physical", where the default is "absolute", or use one of the following:
- --absolute
- Use absolute volume coordinates. For each dimension, the valid range is [0,FOV]. [This is the default]
- --indexed
- Use grid indexes to specify coordinates. For each dimension, the valid value range is [0,Dims-1].
- --relative
- Use relative volume coordinates. For each dimension, the valid range is [0,1].
- --physical
- Use physical volume coordinates. Each given location is transformed into image coordinates via the inverse of the images's index-to-physical space matrix.
- --interpolation
- Image interpolation method. Supported values: "nn", "linear", "cubic", "pv", "sinc-cosine", "sinc-hamming", where the default is "nn", or use one of the following:
- --nn
- Nearest neighbor interpolation [This is the default]
- --linear
- Trilinear interpolation
- --cubic
- Tricubic interpolation
- --pv
- Partial volume interpolation
- --sinc-cosine
- Sinc interpolation with cosine window
- --sinc-hamming
- Sinc interpolation with Hamming window
- --sinc-window-radius <integer>
- Window radius for Sinc interpolation [Default: 3]
- --no-reorient
- Disable image reorientation into RAS alignment.
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE¶
BUGS¶
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
| Mar 20 2024 | CMTK 3.3.1p2 |