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ALIGNRECORDS.PY(1) User Commands ALIGNRECORDS.PY(1)

NAME

AlignRecords.py - Repertoire clonal assignment toolkit (Python 3)

DESCRIPTION

usage: AlignRecords.py [--version] [-h] ...

Multiple aligns sequence fields

help:

show program's version number and exit
show this help message and exit

subcommands:

alignment method
Multiple aligns sequence columns within groups and across rows using MUSCLE.
Multiple aligns sequence fields within rows using MUSCLE
Multiple aligns sequence groups across both columns and rows using MUSCLE.

output files:

align-pass
database with multiple aligned sequences.
align-fail
database with records failing alignment.

required fields:

sequence_id, v_call, j_call <field>
user specified sequence fields to align.

output fields:

<field>_align

AUTHOR


This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.

October 2020 AlignRecords.py 1.0.1