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.\" ========================================================================
.\"
.IX Title "BP_PARSE_HMMSEARCH 1p"
.TH BP_PARSE_HMMSEARCH 1p "2018-10-27" "perl v5.26.2" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
.\" way too many mistakes in technical documents.
.if n .ad l
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.SH "NAME"
bp_parse_hmmsearch \- parse single/multiple HMMSEARCH results file(s) with
                  different output options
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
bp_parse_hmmsearch [\-\-po] [\-\-ps] \-s hmmsearch_file
.PP
bp_parse_hmmsearch [\-\-po] [\-\-ps] \-m index_file
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
.SS "Mandatory Options:"
.IX Subsection "Mandatory Options:"
.Vb 3
\&  \-s  HMMSEARCH file to parse.
\&  \-m  INDEX file that contains a list of HMMSEARCH files for multiple
\&      parsing.
.Ve
.SS "Special Options:"
.IX Subsection "Special Options:"
.Vb 3
\&  \-\-po    Print only the hits that have positive scores.
\&  \-\-ps    Print the total of positive scores found.
\&  \-\-help  Show this documentation.
.Ve
.SH "FEEDBACK"
.IX Header "FEEDBACK"
.SS "Mailing Lists"
.IX Subsection "Mailing Lists"
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
.PP
.Vb 2
\&  bioperl\-l@bioperl.org                  \- General discussion
\&  http://bioperl.org/wiki/Mailing_lists  \- About the mailing lists
.Ve
.SS "Reporting Bugs"
.IX Subsection "Reporting Bugs"
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
.PP
.Vb 1
\&  https://github.com/bioperl/bioperl\-live/issues
.Ve
.SH "AUTHOR"
.IX Header "AUTHOR"
.Vb 1
\&  Mauricio Herrera Cuadra <mauricio at open\-bio.org>
.Ve