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.IX Title "BP_LOCAL_TAXONOMYDB_QUERY 1p"
.TH BP_LOCAL_TAXONOMYDB_QUERY 1p "2021-08-15" "perl v5.32.1" "User Contributed Perl Documentation"
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.SH "NAME"
bp_local_taxonomydb_query \- query a local TaxonomyDB for species or taxonid
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
This script provides an example implementation of access to a local
Taxonomy database implemented with Berkeley \s-1DB\s0 (DB_File module is needed).
.PP
Usage:
.PP
.Vb 1
\& bp_local_taxonomydb_query.PLS: [\-v] \-\-nodes nodes.dmp \-\-names names.dmp "Genus1 species1" "Genus2 species2"
.Ve
.PP
Providing the nodes.dmp and names.dmp files from the \s-1NCBI\s0 Taxonomy
dump (see Bio::DB::Taxonomy::flatfile for more info) is only necessary
on the first time running.  This will create the local indexes and may
take quite a long time.  However once created, these indexes will
allow fast access for species to taxon id \s-1OR\s0 taxon id to species name
lookups.