bp_hmmer_to_table - turn HMMER output into tabular format
bp_hmmer_to_table [-e evaluefilter] [-b bitscorefilter] [--header] [-o outfile] inputfile1 inputfile2 ...
Command line options:
-e/--evalue evalue -- filter by evalue
-b/--bitscore bitscore -- filter by bitscore
--header -- boolean flag to print column header
-o/--out -- optional outputfile to write data,
otherwise will write to STDOUT
-h/--help -- show this documentation
Not technically a SearchIO script as this doesn't use any Bioperl
components but is a useful and fast. The output is tabular output.
query sequence/domain (these are flip-flopped for hmmsearch / hmmpfam)
domain/sequence name or PFAM accession
domain/sequence name (these are flip-flopped for hmmsearch / hmmpfam)
AUTHOR - Jason Stajich¶
Jason Stajich jason_at_bioperl-dot-org