.TH BAMINDEX 1 "July 2013" BIOBAMBAM
.SH NAME
bamindex - create index for BAM file
.SH SYNOPSIS
.PP
.B bamindex
[options]
.SH DESCRIPTION
bamindex reads a BAM file from standard input and produces a BAM index
(.bai) file for this BAM file on standard output.
.PP
.B verbose=<1>:
Valid values are
.IP 1:
print progress report on standard error
.IP 0:
do not print progress report
.PP
.B tmpfile=<filename>:
set the prefix for temporary file names.
By default temporary files are created in the current directory.
.SH AUTHOR
Written by German Tischler.
.SH "REPORTING BUGS"
Report bugs to <germant@miltenyibiotec.de>
.SH COPYRIGHT
Copyright \(co 2009-2013 German Tischler, \(co 2011-2013 Genome Research Limited.
License GPLv3+: GNU GPL version 3 <http://gnu.org/licenses/gpl.html>
.br
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.