.\" -*- mode: troff; coding: utf-8 -*- .\" Automatically generated by Pod::Man 5.01 (Pod::Simple 3.43) .\" .\" Standard preamble: .\" ======================================================================== .de Sp \" Vertical space (when we can't use .PP) .if t .sp .5v .if n .sp .. .de Vb \" Begin verbatim text .ft CW .nf .ne \\$1 .. .de Ve \" End verbatim text .ft R .fi .. .\" \*(C` and \*(C' are quotes in nroff, nothing in troff, for use with C<>. .ie n \{\ . ds C` "" . ds C' "" 'br\} .el\{\ . ds C` . ds C' 'br\} .\" .\" Escape single quotes in literal strings from groff's Unicode transform. .ie \n(.g .ds Aq \(aq .el .ds Aq ' .\" .\" If the F register is >0, we'll generate index entries on stderr for .\" titles (.TH), headers (.SH), subsections (.SS), items (.Ip), and index .\" entries marked with X<> in POD. Of course, you'll have to process the .\" output yourself in some meaningful fashion. .\" .\" Avoid warning from groff about undefined register 'F'. .de IX .. .nr rF 0 .if \n(.g .if rF .nr rF 1 .if (\n(rF:(\n(.g==0)) \{\ . if \nF \{\ . de IX . tm Index:\\$1\t\\n%\t"\\$2" .. . if !\nF==2 \{\ . nr % 0 . nr F 2 . \} . \} .\} .rr rF .\" ======================================================================== .\" .IX Title "Bio::Tradis::CommandLine::TradisBam 3pm" .TH Bio::Tradis::CommandLine::TradisBam 3pm 2024-01-25 "perl v5.38.2" "User Contributed Perl Documentation" .\" For nroff, turn off justification. Always turn off hyphenation; it makes .\" way too many mistakes in technical documents. .if n .ad l .nh .SH NAME Bio::Tradis::CommandLine::TradisBam \- Adds tags to sequences if tags are present .SH VERSION .IX Header "VERSION" version 1.4.5 .SH SYNOPSIS .IX Header "SYNOPSIS" Checks for tradis tags in the BAM and outputs processed TraDIS BAM file with tags attached .SH AUTHOR .IX Header "AUTHOR" Carla Cummins .SH "COPYRIGHT AND LICENSE" .IX Header "COPYRIGHT AND LICENSE" This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. .PP This is free software, licensed under: .PP .Vb 1 \& The GNU General Public License, Version 3, June 2007 .Ve