NAME¶

bam2starch_sge - manual page for bam2starch_sge 2.4.20+dfsg

SYNOPSIS¶

bam2starch_sge [--help] [--clean] <input-indexed-bam-file> [output-starch-file]

DESCRIPTION¶

Pass in the name of an indexed BAM file to create a Starch archive using the cluster.

(stdin isn't supported through this wrapper script, but Starch supports it natively.)

Add --clean to remove <input-indexed-bam-file> after starching it up.

You can pass in the name of the output Starch archive to be created. Otherwise, the output will have the same name as the input file, with an additional

'.starch' ending.

If the input file ends with '.bam', that will be stripped off.

SEE ALSO¶

The full documentation for bam2starch_sge is maintained as a Texinfo manual. If the info and bam2starch_sge programs are properly installed at your site, the command

info bam2starch_sge

should give you access to the complete manual.