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BAM2BED_GNUPARALLEL(1) | User Commands | BAM2BED_GNUPARALLEL(1) |
NAME¶
bam2bed_gnuParallel - manual page for bam2bed_gnuParallel 2.4.20+dfsg
SYNOPSIS¶
bam2bed_gnuParallel [--help] [--clean] <input-indexed-bam-file> [output-bed-file]
DESCRIPTION¶
- Pass in the name of an indexed BAM file to create a sorted BED file using GNU Parallel.
- (stdin isn't supported through this wrapper script.)
- Add --clean to remove <input-indexed-bam-file> after turning it into BED.
- You can pass in the name of the output bed archive to be created. Otherwise, the output will have the same name as the input file, with an additional
- '.bed' ending.
- If the input file ends with '.bam', that will be stripped off.
SEE ALSO¶
The full documentation for bam2bed_gnuParallel is maintained as a Texinfo manual. If the info and bam2bed_gnuParallel programs are properly installed at your site, the command
- info bam2bed_gnuParallel
should give you access to the complete manual.
February 2017 | bam2bed_gnuParallel 2.4.20+dfsg |