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draw-tree(1) draw-tree(1)

NAME

draw-tree - Draw NEWICK (and some other) formatted files.

SYNOPSIS

draw-tree [OPTIONS] tree file

DESCRIPTION

Draw NEWICK (and some other) formatted files.

INPUT OPTIONS:

Produce help message
Page width in inches
Page height in inches
–file arg
predicates to examine
–output arg (=pdf)
Type of output to write: tree, topology, mtree, lengths, dot, ps, pdf, svg
–out arg
Output filename (without extension)
–full
Consider only full splits by collapsing any partial splits.
–iterations arg (=2)
Number of iterations for layout algorithm
–font-size arg (=10)
Font size for taxon names
–angle_iterations arg (=0)
Number of iterations for layout algorithm with small-angle penalties
–labels arg (=horizontal)
Are the names horizontal or angled?
–collapse
Give node lengths evenly to neighboring branches and zero the node lengths.
–layout arg (=graph)
Layout method: graph, equal-angle, equal-daylight, etc.
–greedy
For equal-daylight layout: take as much daylight as possible?
–tree-layout-initial
Start an energy layout with positions from the equal-angle layout - only for multifurcating trees
–no-shade
For equal-daylight layout: reject rotations that shade other groups?
–draw-clouds arg
Draw wandering-ranges in MC trees as clouds.
–seed arg
Random seed
–verbose
Output more log messages on stderr.

REPORTING BUGS:

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

Benjamin Redelings.

Feb 2018