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.TH Atomes 1 "September  2 2022"
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.SH NAME
atomes \- a toolbox to analyze, visualize and create/edit 3D atomistic models
.SH SYNOPSIS
.B atomes
.RI [ options ] " files" ...
.br
.SH DESCRIPTION
This manual page documents briefly the
.B atomes
command.
.PP
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\fBatomes\fP is a toolbox to analyze, visualize and edit/create 3D atomistic models. 

It offers a workspace to open and manage project(s) that can exchange data: analysis results, atomic coordinates ...

\fBatomes\fP also provides an advanced input preparation system for calculations
using well know molecular dynamics codes:

.RS
.B Classical MD:
.IR DLPOLY
and 
.IR LAMMPS
.RE
.RS
.B Ab-initio MD:
.IR CPMD
and 
.IR CP2K
.RE
.RS
.B QM-MM MD:
.IR CPMD
and 
.IR CP2K
.RE

.SH OPTIONS
This program follows the usual GNU command line syntax, with long
options starting with two dashes (`-').
A summary of options is included below.
For a complete description, see the Info files.
.TP
.B \-awf, -AWF
Open atomes workspace file.
.TP
.B \-apf, -APF
Open atomes project file(s).
.TP
.B \-xyz, -XYZ
Import XYZ atomic coordinates(s).
.TP
.B \-pdb, -PDB
Import PDB atomic coordinates(s).
.TP
.B \-cif, -CIF
Import CIF atomic coordinate(s).
.TP
.B \-h, \-\-help
Show summary of options.
.TP
.B \-v, \-\-version
Show version of program.
.SH SEE ALSO
.BR https://atomes.ipcms.fr/

.SH AUTHOR
This manual page was created by Sébastien Le Roux <sebastien.leroux@ipcms.unistra.fr>