table of contents
other versions
- unstable 2.1.0-5+b1
| JOINTFUSION(1) | User Commands | JOINTFUSION(1) |
NAME¶
jointfusion - part of ANTS registration suite
DESCRIPTION¶
Joint Label Fusion: usage:
- jointfusion dim mod [options] output_image
required options:¶
- dim
- Image dimension (2 or 3)
- mod
- Number of modalities or features
- -g atlas1_mod1.nii atlas1_mod2.nii ...atlasN_mod1.nii atlasN_mod2.nii ...
- Warped atlas images
- -tg target_mod1.nii ... target_modN.nii
- Target image(s)
- -l label1.nii ... labelN.nii
- Warped atlas segmentation
- -m <method> [parameters]
- Select voting method. Options: Joint (Joint Label Fusion) May be followed by optional parameters in brackets, e.g., -m Joint[0.1,2]. See below for parameters
other options:¶
- -rp radius
- Patch radius for similarity measures, scalar or vector (AxBxC) Default: 2x2x2
- -rs radius
- Local search radius. Default: 3x3x3
- -x label image.nii
- Specify an exclusion region for the given label.
- -p filenamePattern
- Save the posterior maps (probability that each voxel belongs to each label) as images. The number of images saved equals the number of labels. The filename pattern must be in C printf format, e.g. posterior%04d.nii.gz
- -w filenamePattern
- Save the voting weights as images. The number of images saved equals the number of atlases. The filename pattern must be in C printf format, e.g. weight%04d.nii.gz
- -gp ID_atlas1 ... ID_atlasN
- Assign a group ID for each atlas
- -gpw weight_gp1 ... weight_gpn
- Assign the voting weights to each atlas group
Parameters for -m Joint option:¶
| September 2017 | jointfusion 2.1.0 |