.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH ANTSALIGNORIGIN "1" "September 2017" "antsAlignOrigin 2.1.0" "User Commands"
.SH NAME
antsAlignOrigin \- part of ANTS registration suite
.SH DESCRIPTION
.SS "COMMAND:"
.IP
antsAlignOrigin
.IP
antsAlignOrigin, applied to an input image, transforms it according to a
reference image and a transform (or a set of transforms).
.SS "OPTIONS:"
.HP
\fB\-d\fR, \fB\-\-dimensionality\fR 2/3
.IP
This option forces the image to be treated as a specified\-dimensional image. If
not specified, antsWarp tries to infer the dimensionality from the input image.
.HP
\fB\-i\fR, \fB\-\-input\fR inputFileName
.IP
Currently, the only input objects supported are image objects. However, the
current framework allows for warping of other objects such as meshes and point
sets.
.HP
\fB\-r\fR, \fB\-\-reference\-image\fR imageFileName
.IP
For warping input images, the reference image defines the spacing, origin, size,
and direction of the output warped image.
.HP
\fB\-o\fR, \fB\-\-output\fR warpedOutputFileName
.IP
[transform,alignedImage]
.IP
One can either output the warped image or, if the boolean is set, one can print
out the displacement field based on thecomposite transform and the reference
image.
.HP
\fB\-h\fR
.IP
Print the help menu (short version).
<VALUES>: 0
.HP
\fB\-\-help\fR
.IP
Print the help menu.
<VALUES>: 1, 0