.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH WARPTIMESERIESIMAGEMULTITRANSFORM "1" "September 2017" "WarpTimeSeriesImageMultiTransform 2.1.0" "User Commands"
.SH NAME
WarpTimeSeriesImageMultiTransform \- part of ANTS registration suite
.SH DESCRIPTION
Usage 1 (Forward warp): WarpTimeSeriesImageMultiTransform ImageDimension <moving_image.ext> <output_image.ext> \fB\-R\fR <fixed_image.ext> <MyWarp.ext> <MyAffine.txt> [interpolation]
.PP
Usage 2 (Inverse warp): WarpTimeSeriesImageMultiTransform ImageDimension <fixed_image.ext> <output_image.ext> \fB\-R\fR <moving_image.ext> \fB\-i\fR <MyAffine.txt> <MyInverseWarp.ext> [interpolation]
.PP
Usage Information
.TP
ImageDimension
: 3 or 4 (required argument).
.TP
<moving_image.ext>
: The image to apply the transformation to. The moving_image will be either a 3\-D image with vector voxels or a 4D image with scalar voxels.
.TP
<output_image.ext>
: The resulting image. Output will be of the same type as input, but will be resampled to the domain size defined by the \fB\-R\fR image.
.TP
<MyWarp.ext> <MyAffine.txt>
: Mappings can be stringed together, e.g.: MyAffine.txt MySecondAffine.txt MyWarp.nii.gz MySecondWarp.nii.gz \fB\-i\fR MyInverseAffine.txt
.SH OPTIONS
.TP
\fB\-i\fR
: Will use the inversion of the following affine transform.
.TP
\fB\-R\fR
: Reference image space that you wish to warp into.
.TP
\fB\-\-reslice\-by\-header\fR
: Equivalient to \fB\-i\fR \fB\-mh\fR, or \fB\-fh\fR \fB\-i\fR \fB\-mh\fR if used together with \fB\-R\fR. It uses the orientation matrix and origin encoded in the image file header.
.TP
\fB\-\-tightest\-bounding\-box\fR
: Computes the tightest bounding box using all the affine transformations. It will be overrided by \fB\-R\fR <reference_image.ext> if given.
.IP
These options can be used together with \fB\-R\fR and are typically not used together with any other transforms.
.SS "Interpolation:"
.TP
\fB\-\-use\-NN\fR
: Use Nearest Neighbor Interpolator
.TP
\fB\-\-use\-BSpline\fR
: Use 3rd order B\-Spline Interpolation.