.\"test with man -l <file>
.TH AEVOL "1" "July 2016" "aevol 5.0" "User Manual"
.SH NAME
Aevol \- an in silico experimental evolution platform
.SH SYNOPSIS
.B aevol_run \-h
|
.B \-\-help
.br
.B aevol_run \-V
|
.B \-\-version
.br
.B aevol_run \fR[\fB\-b\fI TIMESTEP\fR] \fR[\fB\-e\fI TIMESTEP\fR | \fB\-n\fI NB_TIMESTEP\fR] \fR[\fB\-p\fI NB_THREADS\fR] \fR[\fB\-vwx\fR]
.SH DESCRIPTION
.B Aevol
is a simulation platform that allows one to let populations of digital organisms evolve in different conditions and study experimentally the mechanisms responsible for the structuration of the genome and the transcriptome.
.TP
.B aevol_run
run an aevol simulation.
.SH OPTIONS
.TP
.B \-h, \-\-help
print help, then exit
.TP
.B \-V, \-\-version
print version number, then exit
.HP
.B \-b, \-\-begin
.I  TIMESTEP
.br
specify time t0 to resume simulation at (default read in last_gener.txt)
.HP
.B \-e, \-\-end
.I  TIMESTEP
.br
specify time of the end of the simulation
.HP
.B \-n, \-\-nb-timesteps
.I NB_TIMESTEPS
.br
specify number of timesteps to be simulated (default 1000)
.TP
.B \-p, \-\-parallel
.I NB_THREADS
run on NB_THREADS threads (use -1 for system default)
.TP
.B \-v, \-\-verbose
be verbose
.TP
.B \-w, \-\-wait
pause after loading
.TP
.B \-x, \-\-noX
don't display X outputs upon start
.br
send SIGUSR1 to switch X output on/off
.SH "SEE ALSO"
.B aevol_create, aevol_modify, aevol_propagate