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XTRACTORE(1) User Commands XTRACTORE(1)

NAME

xtractore - extract sequences corresponding to annotated features from the given sequence file

SYNOPSIS

xtractore [options] features.gff3 sequences.fasta

DESCRIPTION

Options:

print debugging output
print this help message and exit
file containing a list of feature IDs (1 per line with no spaces); if provided, only features with IDs in this file will be extracted
file to which output sequences will be written; default is terminal (stdout)
feature type to extract; can be used multiple times to extract features of multiple types
print version number and exit
print verbose warning and error messages
width of each line of sequence in the Fasta output; default is 80; set to 0 for no formatting
January 2016 xtractore 0.15.1