NAME¶

pmrna - filter out all but the primary isoform from each gene of the input

SYNOPSIS¶

pmrna [options] < annot.gff3 > new.gff3

DESCRIPTION¶

Options:

-h|--help

print this help message and exit

-i|--introns

flag indicating that introns are declared explicitly and do not need to be inferred from exon features; default is to infer introns

-l|--locus

report a single representative mRNA for each locus instead of each gene

-m|--map: FILE

write each gene/mRNA mapping to the specified file

-p|--pseudogenes

disable pseudogene detection and correction