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RUN_TIPP_TOOL.PY(1)

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RUN_TIPP_TOOL.PY(1)

NAME¶

run_tipp_tool.py - helper tool to convert a classification file into a profile

DESCRIPTION¶

usage: run_tipp_tool.py [-h] [-g GENE] -a ACTION [-o OUTPUT] [-p PREFIX]

: [-i INPUT] [-t THRESHOLD]

Performs various tools for TIPP.

optional arguments:¶

-h, --help: show this help message and exit
-g GENE, --gene GENE: use GENE's reference package
-a ACTION, --action ACTION: Run ACTION
-o OUTPUT, --output OUTPUT: OUTPUT directory
-p PREFIX, --prefix PREFIX: PREFIX
-i INPUT, --input INPUT: INPUT destination
-t THRESHOLD, --threshold THRESHOLD: threshold for classification

: [-i INPUT] [-t THRESHOLD]

SEE ALSO¶

October 2020

run_tipp_tool.py