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SALMON(1)

User Commands

SALMON(1)

NAME¶

salmon - highly-accurate, transcript-level quantification estimates from RNA-seq data

SYNOPSIS¶

salmon -h|--help or

DESCRIPTION¶

salmon v1.9.0

: salmon -v|--version or salmon -c|--cite or salmon [--no-version-check] <COMMAND> [-h | options]

Commands:¶

index: : create a salmon index
quant: : quantify a sample
alevin: : single cell analysis
swim: : perform super-secret operation

: quantmerge : merge multiple quantifications into a single file

November 2022

salmon 1.9.0