'\" t
.\"     Title: reapr-seqrename
.\"    Author: [see the "AUTHOR(S)" section]
.\" Generator: Asciidoctor 2.0.20
.\"      Date: 
.\"    Manual: \ \&
.\"    Source: \ \&
.\"  Language: English
.\"
.TH "REAPR\-SEQRENAME" "1" "" "\ \&" "\ \&"
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.SH "NAME"
reapr-seqrename \- renames all sequences in a BAM file
.SH "SYNOPSIS"
.sp
\fBreapr seqrename\fP <renamefile> <in.bam> <out.bam>
.SH "DESCRIPTION"
.sp
<renamefile> is the file .info made by \fBfacheck\fP, which contains the mapping of old name to new name.
.SH "SEE ALSO"
.sp
reapr(1)