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.\"     Title: reapr-facheck
.\"    Author: [see the "AUTHOR(S)" section]
.\" Generator: Asciidoctor 2.0.20
.\"      Date: 
.\"    Manual: \ \&
.\"    Source: \ \&
.\"  Language: English
.\"
.TH "REAPR\-FACHECK" "1" "" "\ \&" "\ \&"
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.SH "NAME"
reapr-facheck \- checks IDs in fasta file
.SH "SYNOPSIS"
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\fBreapr facheck\fP <in.fa> [out_prefix]
.SH "DESCRIPTION"
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Checks that the names in the fasta file are ok.  Things like
trailing whitespace or characters (|\*(Aq:\-) could break the pipeline.
.sp
If out_prefix is not given, it will die when a bad ID is found.
No output means everything is OK.
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If out_prefix is given, writes a new fasta file out_prefix.fa with new
names, and out_prefix.info which has the mapping from old name to new name.
.SH "SEE ALSO"
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reapr(1)