.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.48.5.
.TH DIFF_TOMO "1" "November 2021" "diff_tomo from pyFAI version 0.20.0: 21/01/2021" "User Commands"
.SH NAME
diff_tomo \- GUI interface for reduction of diffraction tomography experiments
.SH DESCRIPTION
usage: diff_map [options] \fB\-p\fR ponifile imagefiles*
If the number of files is too large, use double quotes like "*.edf"
.PP
Azimuthal integration for diffraction imaging. Diffraction mapping is an
experiment where 2D diffraction patterns are recorded while performing a 2D
scan. Diff_map is a graphical application (based on pyFAI and h5py) which
allows the reduction of this 4D dataset into a 3D dataset containing the two
motion dimensions and the many diffraction angles (thousands). The resulting
dataset can be opened using PyMca roitool where the 1d dataset has to be
selected as last dimension. This result file aims at being NeXus compliant.
This tool can be used for diffraction tomography experiment as well,
considering the slow scan direction as the rotation.
.SS "positional arguments:"
.TP
FILE
List of files to integrate. Mandatory without GUI
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-V\fR, \fB\-\-version\fR
show program's version number and exit
.TP
\fB\-o\fR FILE, \fB\-\-output\fR FILE
HDF5 File where processed map will be saved. Mandatory
without GUI
.TP
\fB\-v\fR, \fB\-\-verbose\fR
switch to verbose/debug mode, default: quiet
.TP
\fB\-P\fR FILE, \fB\-\-prefix\fR FILE
Prefix or common base for all files
.TP
\fB\-e\fR EXTENSION, \fB\-\-extension\fR EXTENSION
Process all files with this extension
.TP
\fB\-t\fR FAST, \fB\-\-fast\fR FAST
number of points for the fast motion. Mandatory
without GUI
.TP
\fB\-r\fR SLOW, \fB\-\-slow\fR SLOW
number of points for slow motion. Mandatory without
GUI
.TP
\fB\-c\fR NPT_RAD, \fB\-\-npt\fR NPT_RAD
number of points in diffraction powder pattern.
Mandatory without GUI
.TP
\fB\-d\fR FILE, \fB\-\-dark\fR FILE
list of dark images to average and subtract (comma
separated list)
.TP
\fB\-f\fR FILE, \fB\-\-flat\fR FILE
list of flat images to average and divide (comma
separated list)
.TP
\fB\-m\fR FILE, \fB\-\-mask\fR FILE
file containing the mask, no mask by default
.TP
\fB\-p\fR FILE, \fB\-\-poni\fR FILE
file containing the diffraction parameter (poni\-file),
Mandatory without GUI
.TP
\fB\-O\fR OFFSET, \fB\-\-offset\fR OFFSET
do not process the first files
.TP
\fB\-g\fR, \fB\-\-gpu\fR
process using OpenCL on GPU
.TP
\fB\-S\fR, \fB\-\-stats\fR
show statistics at the end
.TP
\fB\-\-gui\fR
Use the Graphical User Interface
.TP
\fB\-\-no\-gui\fR
Do not use the Graphical User Interface
.TP
\fB\-\-config\fR CONFIG
provide a JSON configuration file
.PP
Bugs: Many, see hereafter: 1)If the number of files is too large, use double
quotes "*.edf" 2)There is a known bug on Debian7 where importing a large
number of file can take much longer than the integration itself: consider
passing files in the command line