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| MASKALIGNEDREADS(1) | User Commands | MASKALIGNEDREADS(1) |
NAME¶
maskAlignedReads - Mask aligned reads in regions file
DESCRIPTION¶
usage: maskAlignedReads [-h] [-v] [-l LOGFILE] [-d] [-i]
- inCmpFile inRgnFofn outRgnFofn
Use in.cmp.h5 to mask corresponding regions of files in in.rgn.h5, write output to a new rgn.fofn.
positional arguments:¶
- inCmpFile
- An input cmp.h5 file.
- inRgnFofn
- A fofn of input region table files.
- outRgnFofn
- A fofn of output region table files.
optional arguments:¶
- -h, --help
- show this help message and exit
- -v, --version
- show program's version number and exit
- -l LOGFILE, --logFile LOGFILE
- Specify a file to log to. Defaults to stderr. (default: None)
- -d, --debug
- Increases verbosity of logging (default: False)
- -i, --info
- Display informative log entries (default: False)
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| October 2018 | maskAlignedReads 0.3.1 |