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| CREATECHEMISTRYHEADER(1) | User Commands | CREATECHEMISTRYHEADER(1) |
NAME¶
createChemistryHeader - Create a SAM header with PacBio sequencing chemistry information
DESCRIPTION¶
usage: getChemistryHeader.py [-h] [--debug] --bas_files BAS_FILES
- [BAS_FILES ...]
- input_alignment_file output_header_file
createChemistryHeader creates a SAM header that contains the chemistry information used by Quiver.
positional arguments:¶
- input_alignment_file
- A SAM or BAM file produced by BLASR.
- output_header_file
- Name of the SAM or BAM header file that will be created with chemistry information loaded.
optional arguments:¶
- -h, --help
- show this help message and exit
- --debug
- Output detailed log information. (default: False)
- --bas_files BAS_FILES [BAS_FILES ...]
- The bas or bax files containing the reads that were aligned in the input_alignment_file. Also can be a fofn of bas or bax files. (default: None)
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| October 2018 | createChemistryHeader 0.3.1 |