Scroll to navigation

ASN2XML(1) NCBI Tools User's Manual ASN2XML(1)

NAME

asn2xml - translate biological data from ASN.1 to XML

SYNOPSIS

asn2xml [-] [-b F] [-e] [-i filename] [-l filename] [-o filename] [-s]

DESCRIPTION

asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1 format to an isomorphic XML representation. It differs from asn2asn -x in that it converts packed sequence data back into human-readable ASCII text.

OPTIONS

A summary of options is included below.

-
Print usage message
Input asnfile in text mode
Input is a Seq-entry
Read ASN.1 from filename (default is stdin)
Log errors to filename (default is stderr)
Write XML to filename (default is stdout)
Input is a Seq-submit

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2gb(1), asndhuff(1), gene2xml(1), /usr/share/doc/ncbi-tools-bin/README.asn2xml, /usr/share/doc/libncbi6/ncbixml.txt.gz

2005-05-16 NCBI