.TH "DCM2NII" "1" "April 2010" "Michael Hanke" "User Commands"
.SH NAME
dcm2nii \- convert DICOM or PAR/REC image into the NIfTI format
.SH SYNOPSIS
\fBdcm2nii\fR <options> <sourcenames>
.SH OPTIONS
.TP
\fB\-a\fR Anonymize [remove identifying information]: Y,N = Y
.TP
\fB\-b\fR load settings from specified inifile, e.g. '\-b /etc/mricron.ini'
.TP
\fB\-c\fR Collapse input folders: Y,N = N
.TP
\fB\-d\fR Date in filename [filename.dcm \-> 20061230122032.nii]: Y,N = Y
.TP
\fB\-e\fR events (series/acq) in filename [filename.dcm \-> s002a003.nii]: Y,N = Y
.TP
\fB\-f\fR Source filename [e.g. filename.par \-> filename.nii]: Y,N = Y
.TP
\fB\-g\fR gzip output, filename.nii.gz [ignored if '\-n n']: Y,N = Y
.TP
\fB\-i\fR ID  in filename [filename.dcm \-> johndoe.nii]: Y,N = Y
.TP
\fB\-n\fR output .nii file [if no, create .hdr/.img pair]: Y,N = Y
.TP
\fB\-o\fR Output Directory, e.g. '/tmp' (if unspecified, source directory is used)
.TP
\fB\-p\fR Protocol in filename [filename.dcm \-> TFE_T1.nii]: Y,N = Y
.TP
\fB\-r\fR Reorient image to nearest orthogonal: Y,N
.TP
\fB\-s\fR SPM2/Analyze not SPM5/NIfTI [ignored if '\-n y']: Y,N = N
.TP
\fB\-v\fR Convert every image in the directory: Y,N = Y
.TP
\fB\-x\fR Reorient and crop 3D NIfTI images: Y,N = N
.PP
You can also set defaults by editing /home/michael/.dcm2nii/dcm2nii.ini
.SH "EXAMPLES"
dcm2nii -a y /home/joe/Documents/dcm/IM_0116
.SH "AUTHOR"
\fBdcm2nii\fR was written by Chris Rorden.
.PP
This manual page was written by Michael Hanke <michael.hanke@gmail.com>,
for the Debian project (but may be used by others).
.SH "SEE ALSO"
.BR mricron "(1)"
.TP
\fBMRIcron Homepage:\fR http://www.cabiatl.com/mricro/mricron/