.TH mia\-3dvf2transform 1 "v2.4.7"  "USER COMMANDS"
.SH NAME
mia\-3dvf2transform
\- Convert a 3D vectorfield from a 3D transformation.
.SH SYNOPSIS
.B  mia\-3dvf2transform \-i <in\-file> \-o <out\-file> [options]
.SH DESCRIPTION
.B mia\-3dvf2transform
Creates a 3D transformation from a vector field. The input vector field is simply encapsulated into the transformation file format. The boundary conditions and the image interpolator kernel can be set at the command line.
.SH OPTIONS
.RS
.IP "\-i \-\-in-file=(input, required); io"
input transformation 
 For supported file types see PLUGINS:3dvf/io
.IP "\-o \-\-out-file=(output, required); io"
output vector field 
 For supported file types see PLUGINS:3dtransform/io
.IP "\-k \-\-imgkernel=bspline:d=3"
image interpolator kernel which is used when the transformation is applied to an image
 For supported plugins see PLUGINS:1d/splinekernel
.IP "\-b \-\-imgboundary=mirror"
Boundary condition applied when the transformation is used to transform an image
 For supported plugins see PLUGINS:1d/splinebc
.RE
.SS Help & Info
.RS
.IP "\-V \-\-verbose=warning"
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

.RS 10
.I
trace
\(hy Function call trace
.RE
.RS 10
.I
debug
\(hy Debug output
.RE
.RS 10
.I
info
\(hy Low level messages
.RE
.RS 10
.I
message
\(hy Normal messages
.RE
.RS 10
.I
warning
\(hy Warnings
.RE
.RS 10
.I
fail
\(hy Report test failures
.RE
.RS 10
.I
error
\(hy Report errors
.RE
.RS 10
.I
fatal
\(hy Report only fatal errors
.RE
.IP "   \-\-copyright"
print copyright information

.IP "\-h \-\-help"
print this help

.IP "\-? \-\-usage"
print a short help

.IP "   \-\-version"
print the version number and exit

.RE
.SS Processing
.RS
.IP "   \-\-threads=\-1"
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (\-1: automatic estimation).

.RE
.SH PLUGINS: 1d/splinebc
.TP 10
.B mirror
Spline interpolation boundary conditions that mirror on the boundary
.P
.RS 14
(no parameters)
.RE
.TP 10
.B repeat
Spline interpolation boundary conditions that repeats the value at the boundary
.P
.RS 14
(no parameters)
.RE
.TP 10
.B zero
Spline interpolation boundary conditions that assumes zero for values outside
.P
.RS 14
(no parameters)
.RE
.SH PLUGINS: 1d/splinekernel
.TP 10
.B bspline
B-spline kernel creation , supported parameters are: 
.P
.RS 14
.I
d
= 3; int in [0, 5] 
.RS 2
Spline degree.

.RE
.RE
.TP 10
.B omoms
OMoms-spline kernel creation, supported parameters are: 
.P
.RS 14
.I
d
= 3; int in [3, 3] 
.RS 2
Spline degree.

.RE
.RE
.SH PLUGINS: 3dtransform/io
.TP 10
.B bbs
Binary (non-portable) serialized IO of 3D transformations
.P
.RS 14
Recognized file extensions:  .bbs
.RE
 
.TP 10
.B datapool
Virtual IO to and from the internal data pool
.P
.RS 14
Recognized file extensions:  .@
.RE
 
.TP 10
.B vista
Vista storage of 3D transformations
.P
.RS 14
Recognized file extensions:  .v, .v3dt
.RE
 
.TP 10
.B xml
XML serialized IO of 3D transformations
.P
.RS 14
Recognized file extensions:  .x3dt
.RE
 
.SH PLUGINS: 3dvf/io
.TP 10
.B cvista
obsolete 3d vector field io plugin for range compressend vista (saving not supported)
.P
.RS 14
Recognized file extensions:  .CVF, .cvf
.RE
 
.RS 14
Supported element types: 
.RS 2
floating point 32 bit
.RE
 
.RE
.TP 10
.B datapool
Virtual IO to and from the internal data pool
.P
.RS 14
Recognized file extensions:  .@
.RE
 
.TP 10
.B vista
a 3d vector field io plugin for vista
.P
.RS 14
Recognized file extensions:  .V, .VF, .v, .vf
.RE
 
.RS 14
Supported element types: 
.RS 2
floating point 32 bit
.RE
 
.RE
.TP 10
.B vtk
3D Vector field in- and output (experimental). No attributes are stored or read.
.P
.RS 14
Recognized file extensions:  .VTK, .VTKVF, .vtk, .vtkvf
.RE
 
.RS 14
Supported element types: 
.RS 2
floating point 32 bit
.RE
 
.RE
.SH EXAMPLE
Transform the input vector field field.vtk to the transformation trans.v3df and specify zero boundary conditions and b\-splines of degree 2 for image interpolation.
.HP
mia\-3dvf2transform \-i field.vtk \-o trans.v3df \-\-imgkernel bspline:d=2 \-\-imgboundary zero
.SH AUTHOR(s)
Gert Wollny
.SH COPYRIGHT
This software is Copyright (c) 1999\(hy2015 Leipzig, Germany and Madrid, Spain.
It comes  with  ABSOLUTELY  NO WARRANTY  and  you  may redistribute it under the terms of the GNU 
GENERAL PUBLIC LICENSE Version 3 (or later). For more 
information run the program with the option '\-\-copyright'.