|Bio::Seq::SeqFastaSpeedFactory(3pm)||User Contributed Perl Documentation||Bio::Seq::SeqFastaSpeedFactory(3pm)|
Bio::Seq::SeqFastaSpeedFactory - Rapid creation of Bio::Seq objects through a factory
use Bio::Seq::SeqFastaSpeedFactory; my $factory = Bio::Seq::SeqFastaSpeedFactory->new(); my $seq = $factory->create( -seq => 'WYRAVLC', -id => 'name' );
This factory was designed to build Bio::Seq objects as quickly as possible, but is not as generic as Bio::Seq::SeqFactory. It can be used to create sequences from non-rich file formats. The Bio::SeqIO::fasta sequence parser uses this factory.
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AUTHOR - Jason Stajich¶
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::Seq::SeqFastaSpeedFactory->new(); Function: Builds a new Bio::Seq::SeqFastaSpeedFactory object Returns : Bio::Seq::SeqFastaSpeedFactory Args : None
Title : create Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name'); Function: Instantiates a new Bio::Seq object, correctly built but very fast, knowing stuff about Bio::PrimarySeq and Bio::Seq Returns : A Bio::Seq object Args : Initialization parameters for the sequence object we want: -id -primary_id -display_id -desc -seq -alphabet