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.IX Title "Bio::Search::Result::WABAResult 3pm"
.TH Bio::Search::Result::WABAResult 3pm "2021-08-15" "perl v5.32.1" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
.\" way too many mistakes in technical documents.
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.SH "NAME"
Bio::Search::Result::WABAResult \- Result object for WABA alignment output
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
# use this object exactly as you would a GenericResult
# the only extra method is query_database which is the 
# name of the file where the query sequence came from
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
This object is for \s-1WABA\s0 result output, there is little difference
between this object and a GenericResult save the addition of one
method query_database.  Expect many of the fields for GenericResult to
be empty however as \s-1WABA\s0 was not intended to provide a lot of extra
information other than the alignment.
.SH "FEEDBACK"
.IX Header "FEEDBACK"
.SS "Mailing Lists"
.IX Subsection "Mailing Lists"
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list.  Your participation is much appreciated.
.PP
.Vb 2
\&  bioperl\-l@bioperl.org                  \- General discussion
\&  http://bioperl.org/wiki/Mailing_lists  \- About the mailing lists
.Ve
.SS "Support"
.IX Subsection "Support"
Please direct usage questions or support issues to the mailing list:
.PP
\&\fIbioperl\-l@bioperl.org\fR
.PP
rather than to the module maintainer directly. Many experienced and 
reponsive experts will be able look at the problem and quickly 
address it. Please include a thorough description of the problem 
with code and data examples if at all possible.
.SS "Reporting Bugs"
.IX Subsection "Reporting Bugs"
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
.PP
.Vb 1
\&  https://github.com/bioperl/bioperl\-live/issues
.Ve
.SH "AUTHOR \- Jason Stajich"
.IX Header "AUTHOR - Jason Stajich"
Email jason@bioperl.org
.SH "APPENDIX"
.IX Header "APPENDIX"
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
.SS "new"
.IX Subsection "new"
.Vb 5
\& Title   : new
\& Usage   : my $obj = Bio::Search::Result::WABAResult\->new();
\& Function: Builds a new Bio::Search::Result::WABAResult object 
\& Returns : Bio::Search::Result::WABAResult
\& Args    : \-query_database => "name of the database where the query came from"
.Ve
.SS "query_database"
.IX Subsection "query_database"
.Vb 6
\& Title   : query_database
\& Usage   : $obj\->query_database($newval)
\& Function: Data field for the database filename where the 
\&           query sequence came from
\& Returns : value of query_database
\& Args    : newvalue (optional)
.Ve
.SS "All other methods are inherited from Bio::Search::Result::GenericResult"
.IX Subsection "All other methods are inherited from Bio::Search::Result::GenericResult"
See the Bio::Search::Result::GenericResult for complete
documentation of the rest of the methods that are available for this
module.