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.\" ========================================================================
.\"
.IX Title "Bio::Restriction::IO::itype2 3pm"
.TH Bio::Restriction::IO::itype2 3pm "2018-10-27" "perl v5.26.2" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
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.SH "NAME"
Bio::Restriction::IO::itype2 \- itype2 enzyme set
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
Do not use this module directly.  Use it via the Bio::Restriction::IO class.
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
This is tab delimited, entry per line format which is fast to process.
.SH "FEEDBACK"
.IX Header "FEEDBACK"
.SS "Mailing Lists"
.IX Subsection "Mailing Lists"
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing lists Your participation is much appreciated.
.PP
.Vb 2
\&  bioperl\-l@bioperl.org                  \- General discussion
\&  http://bioperl.org/wiki/Mailing_lists  \- About the mailing lists
.Ve
.SS "Support"
.IX Subsection "Support"
Please direct usage questions or support issues to the mailing list:
.PP
\&\fIbioperl\-l@bioperl.org\fR
.PP
rather than to the module maintainer directly. Many experienced and 
reponsive experts will be able look at the problem and quickly 
address it. Please include a thorough description of the problem 
with code and data examples if at all possible.
.SS "Reporting Bugs"
.IX Subsection "Reporting Bugs"
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution.  Bug reports can be submitted via the
web:
.PP
.Vb 1
\&  https://github.com/bioperl/bioperl\-live/issues
.Ve
.SH "AUTHOR"
.IX Header "AUTHOR"
Rob Edwards, redwards@utmem.edu
.SH "CONTRIBUTORS"
.IX Header "CONTRIBUTORS"
Heikki Lehvaslaiho, heikki-at-bioperl-dot-org
Mark A. Jensen, maj-at-fortinbras-dot-us
.SH "APPENDIX"
.IX Header "APPENDIX"
The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _
.SS "read"
.IX Subsection "read"
.Vb 5
\& Title   : read
\& Usage   : $renzs = $stream\->read
\& Function: reads all the restrction enzymes from the stream
\& Returns : a Bio::Restriction::IO object
\& Args    : none
.Ve
.PP
Internally creates a hash of enzyme information which is passed on to 
Bio::Restriction::Enzyme::new.
.SS "_xln_sub"
.IX Subsection "_xln_sub"
.Vb 5
\& Title   : _xln_sub
\& Function: Translates withrefm coords to Bio::Restriction coords
\& Args    : Bio::Restriction::Enzyme object, scalar integer (cut posn)
\& Note    : Used internally; pass as a coderef to the B:R::Enzyme 
\&           constructor
.Ve
.SS "write"
.IX Subsection "write"
.Vb 6
\& Title   : write
\& Usage   : $stream\->write($renzs)
\& Function: writes restriction enzymes into the stream
\& Returns : 1 for success and 0 for error
\& Args    : a Bio::Restriction::Enzyme
\&           or a Bio::Restriction::EnzymeCollection object
.Ve