.\" -*- mode: troff; coding: utf-8 -*- .\" Automatically generated by Pod::Man 5.01 (Pod::Simple 3.43) .\" .\" Standard preamble: .\" ======================================================================== .de Sp \" Vertical space (when we can't use .PP) .if t .sp .5v .if n .sp .. .de Vb \" Begin verbatim text .ft CW .nf .ne \\$1 .. .de Ve \" End verbatim text .ft R .fi .. .\" \*(C` and \*(C' are quotes in nroff, nothing in troff, for use with C<>. .ie n \{\ . ds C` "" . ds C' "" 'br\} .el\{\ . ds C` . ds C' 'br\} .\" .\" Escape single quotes in literal strings from groff's Unicode transform. .ie \n(.g .ds Aq \(aq .el .ds Aq ' .\" .\" If the F register is >0, we'll generate index entries on stderr for .\" titles (.TH), headers (.SH), subsections (.SS), items (.Ip), and index .\" entries marked with X<> in POD. Of course, you'll have to process the .\" output yourself in some meaningful fashion. .\" .\" Avoid warning from groff about undefined register 'F'. .de IX .. .nr rF 0 .if \n(.g .if rF .nr rF 1 .if (\n(rF:(\n(.g==0)) \{\ . if \nF \{\ . de IX . tm Index:\\$1\t\\n%\t"\\$2" .. . if !\nF==2 \{\ . nr % 0 . nr F 2 . \} . \} .\} .rr rF .\" ======================================================================== .\" .IX Title "Bio::DB::HTS::PileupWrapper 3pm" .TH Bio::DB::HTS::PileupWrapper 3pm 2024-01-10 "perl v5.38.2" "User Contributed Perl Documentation" .\" For nroff, turn off justification. Always turn off hyphenation; it makes .\" way too many mistakes in technical documents. .if n .ad l .nh .SH LICENSE .IX Header "LICENSE" Copyright [2015\-2018] EMBL-European Bioinformatics Institute .PP Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at .PP .Vb 1 \& http://www.apache.org/licenses/LICENSE\-2.0 .Ve .PP Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. .SH NAME Bio::DB::HTS::PileupWrapper \-\- Add high\-level methods to Bio::DB::HTS::Pileup .SH SYNOPSIS .IX Header "SYNOPSIS" See "The generic \fBfetch()\fR and \fBpileup()\fR methods" in Bio::DB::HTS for usage of the \fBpileup()\fR method. .SH DESCRIPTION .IX Header "DESCRIPTION" See Bio::DB::HTS::Pileup for documentation of this object's methods. This class is used by the high-level API to return Bio::DB::HTS::AlignWrapper objects from the call to \fBalignment()\fR rather than Bio::DB::HTS::Alignment. .SH AUTHOR .IX Header "AUTHOR" Rishi Nag .SH "SEE ALSO" .IX Header "SEE ALSO" Bio::Perl, Bio::DB::HTS, Bio::DB::HTS::Constants