.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.12.
.TH SIM_READS "1" "March 2020" "sim_reads 1.1.3" "User Commands"
.SH NAME
sim_reads \- Convert Fastq sequences to Fasta sequences.
.SH SYNOPSIS
.B sim_reads
\fI\,ref.fa reads.fa\/\fR
.SH DESCRIPTION
sim_reads \- Simulate sequencing reads from references.
.SS "Allowed Options:"
.TP
\fB\-\-depth\fR arg (=30)
sequencing depth of the sample
.TP
\fB\-\-error_rate\fR arg (=0.01)
error rate
.TP
\fB\-\-read_length\fR arg (=100)
read length
.TP
\fB\-\-paired\fR
if paired\-end
.TP
\fB\-\-sd\fR arg (=\-1)
sd
.TP
\fB\-\-insert_distance\fR arg (=500)
insert distance
.TP
\fB\-\-print_correct\fR
output correct reads
.SH AUTHOR
 This manpage was written by Andreas Tille for the Debian distribution and
 can be used for any other usage of the program.