'\" t
.\"     Title: gt-encseq-bitextract
.\"    Author: [FIXME: author] [see http://www.docbook.org/tdg5/en/html/author]
.\" Generator: DocBook XSL Stylesheets vsnapshot <http://docbook.sf.net/>
.\"      Date: 10/25/2023
.\"    Manual: GenomeTools Manual
.\"    Source: GenomeTools 1.6.5
.\"  Language: English
.\"
.TH "GT\-ENCSEQ\-BITEXTRA" "1" "10/25/2023" "GenomeTools 1\&.6\&.5" "GenomeTools Manual"
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.SH "NAME"
gt-encseq-bitextract \- Extracts internal data from encoded sequences\&.
.SH "SYNOPSIS"
.sp
\fBgt encseq bitextract\fR [option \&...] [indexname]
.SH "DESCRIPTION"
.PP
\fB\-mirrored\fR [\fIyes|no\fR]
.RS 4
mirror sequence (default: no)
.RE
.PP
\fB\-stoppos\fR [\fIvalue\fR]
.RS 4
output stop positions (default: undefined)
.RE
.PP
\fB\-specialranges\fR [\fIyes|no\fR]
.RS 4
output special ranges (default: no)
.RE
.PP
\fB\-bitpos\fR [\fIvalue\fR]
.RS 4
extract and display two bit encoding for position (default: undefined)
.RE
.PP
\fB\-dir\fR [\fIstring\fR]
.RS 4
specify reading direction (fwd, cpl, rev, rcl) (default: fwd)
.RE
.PP
\fB\-help\fR
.RS 4
display help and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "REPORTING BUGS"
.sp
Report bugs to https://github\&.com/genometools/genometools/issues\&.