NAME¶slice_fasta_gff - Slice subsequences from an input FASTA file
SYNOPSIS¶slice_fasta [options] <FASTA file> <GFF file>
DESCRIPTION¶slice_fasta from FSA 1.15.9
- -t, --type <string>
- only look at features of particular type
Slice subsequences from an input FASTA file. Assumes 1-based, fully-closed coordinates. If no strand information is available, then the + strand is assumed. If the - strand is requested, then the subsequence is pulled out and then reverse-complemented.
Assumes a DNA alphabet.
AUTHOR¶This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
|December 2015||slice_fasta_gff 1.15.9|