.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.3.
.TH SLICE_FASTA_GFF "1" "December 2015" "slice_fasta_gff 1.15.9" "User Commands"
.SH NAME
slice_fasta_gff \- Slice subsequences from an input FASTA file
.SH SYNOPSIS
.B slice_fasta
[\fI\,options\/\fR] \fI\,<FASTA file> <GFF file>\/\fR
.SH DESCRIPTION
slice_fasta from FSA 1.15.9
.SH OPTIONS
.TP
\fB\-t\fR, \fB\-\-type\fR <string>
only look at features of particular type
.PP
Slice subsequences from an input FASTA file.
Assumes 1\-based, fully\-closed coordinates.
If no strand information is available, then the + strand is assumed.
If the \- strand is requested, then the subsequence is pulled out and then reverse\-complemented.
.PP
Assumes a DNA alphabet.
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.