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FFINDEX_FROM_FASTA(1) User Commands FFINDEX_FROM_FASTA(1)

NAME

ffindex_from_fasta - populate index from FASTA file

DESCRIPTION

USAGE: ffindex_from_fasta -v | [-s] data_filename index_filename fasta_filename
-s
sort index file
-i
use identifier as name (you probably want -s too)
-n
use incremental number as id (default)
-v
print version

ENVIRONMENT

FFINDEX_MAX_INDEX_ENTRIES - allocate memory for this number of entries

Designed and implemented by Andreas Hauser <andy@splashground.de>.

BUGS

User feedback is welcome, especially bugs, performance issues and last but not least convenience of the programs and API.

Email Andreas Hauser hauser@genzentrum.lmu.de.

May 2019 ffindex_from_fasta version 1.00, off_t = 64 bits