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FASTQ_TO_FASTA(1) User Commands FASTQ_TO_FASTA(1)

NAME

fastq_to_fasta - Convert FASTQ files to FASTA files

DESCRIPTION

usage: fastq_to_fasta [-h] [-r] [-n] [-v] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)

[-h]
= This helpful help screen.
[-r]
= Rename sequence identifiers to numbers.
[-n]
= keep sequences with unknown (N) nucleotides.
Default is to discard such sequences.
[-v]
= Verbose - report number of sequences.
report will be printed to STDOUT.
If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.
[-z]
= Compress output with GZIP.
[-i INFILE]
= FASTA/Q input file. default is STDIN.
[-o OUTFILE] = FASTA output file. default is STDOUT.

SEE ALSO

The quality of this automatically generated manpage might be insufficient. It is suggested to visit

http://hannonlab.cshl.edu/fastx_toolkit/commandline.html

to get a better layout as well as an overview about connected FASTX tools.

September 2018 fastq_to_fasta 0.0.14