NAME¶

sand_uncompress_reads - uncompress sequence data

SYNOPSIS¶

sand_uncompress_reads [-qvh] [infile] [outfile]

DESCRIPTION¶

sand_uncompress_reads reads sequence data in compressed FASTA format (cfa) used by sand_filter_master(1) and sand_align_master(1). and produces output in the standard FASTA format.

If the output file is omitted, standard output is used. if the input file is omitted, standard input is used. After completing the compression, this program will output a summary line of sequences and bytes compressed.

OPTIONS¶

 -q

Quiet mode: suppress summary line.

 -h

Display version information.

 -v

Show help text.

EXIT STATUS¶

On success, returns zero. On failure, returns non-zero.

EXAMPLES¶

To uncompress mydata.cfa into mydata.fasta:

% sand_uncompress_reads mydata.cfa mydata.fa

COPYRIGHT¶

The Cooperative Computing Tools are Copyright (C) 2005-2019 The University of Notre Dame. This software is distributed under the GNU General Public License. See the file COPYING for details.

SEE ALSO¶

• Cooperative Computing Tools Documentation
• SAND User Manual
• sand_filter_master(1) sand_filter_kernel(1) sand_align_master(1) sand_align_kernel(1) sand_compress_reads(1) sand_uncompress_reads(1) work_queue_worker(1)