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BOWTIE2-INSPECT(1) User Commands BOWTIE2-INSPECT(1)

NAME

bowtie2-inspect - wrapper for bowtie2-inspect-* index

SYNOPSIS

bowtie2-inspect [options]* <bt2_base>

DESCRIPTION

Bowtie 2 version 2.4.5 by Ben Langmead (langmea@cs.jhu.edu, www.cs.jhu.edu/~langmea)

<bt2_base>
bt2 filename minus trailing .1.bt2/.2.bt2
By default, prints FASTA records of the indexed nucleotide sequences to standard out. With -n, just prints names. With -s, just prints a summary of the index parameters and sequences.

OPTIONS

force inspection of the 'large' index, even if a 'small' one is present.
use the debug binary; slower, assertions enabled
log the issued command
Number of characters across in FASTA output (default: 60)
Print reference sequence names only
Print summary incl. ref names, lengths, index properties
Save output to filename (default stdout)
Verbose output (for debugging)
print this and message quit
February 2022 bowtie2-inspect 2.4.5