.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.48.5.
.TH CONVERTSAMPLES "1" "September 2021" "convertSamples 0.7.5+dfsg" "User Commands"
.SH NAME
convertSamples \- convert or normalize MCMC expression samples
.SH SYNOPSIS
.B convertSamples
\fI\,-a <action> -o <outFileName>  \/\fR[\fI\,OPTIONS\/\fR] [\fI\,sampleFile\/\fR]
.SH DESCRIPTION
Converts or normalizes MCMC expression samples.
.IP
[sampleFile] should contain transposed MCMC samples.
.SH OPTIONS
.HP
\fB\-\-help\fR
.IP
Show this help information.
.HP
\fB\-\-Nmap=\fR<Nmap>
.IP
Total number of aligned reads. Or a normalization constant, when normalizing.
.HP
\fB\-a\fR <action> ,   \fB\-\-action=\fR<action>
.IP
Action to perform options:
.IP
T2R \- theta to rpkm
R2T \- rpkm to theta
T2RL \- theta to log\-rpkm
C2R \- counts to rpkm
R2C \- rpkm 2 counts
NORM \- normalize (samples are multiplied by Nmap)
LOGNORM \- log+normalize (samples are multiplied by Nmap and logged).
.HP
\fB\-o\fR <outFileName> ,   \fB\-\-outFile=\fR<outFileName>
.IP
Name of the output file.
.HP
\fB\-t\fR <trInfoFileName> ,   \fB\-\-trInfoFile=\fR<trInfoFileName>
.IP
File containing transcript information.
.HP
\fB\-v\fR ,   \fB\-\-verbose\fR
.IP
Verbose output. (default: Off)