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.\" ========================================================================
.\"
.IX Title "BP_SPLIT_SEQ 1p"
.TH BP_SPLIT_SEQ 1p "2021-08-15" "perl v5.32.1" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
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.SH "NAME"
bp_split_seq \- splits a sequence into equal sized chunks with an optional
            overlapping range
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
bp_split_seq \-c 10000 [\-o 1000] [\-i] \-f seq.in
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
The script will split sequences into chunks
.PP
Mandatory Options:
.PP
.Vb 2
\&  \-c  Desired length of the resulting sequences.
\&  \-f  Input file (must be FASTA format).
.Ve
.PP
Special Options:
.PP
.Vb 4
\&  \-o  Overlapping range between the resulting sequences.
\&  \-i  Create an index file with the resulting sequence files. This is
\&      useful if you want to pass this list as input arguments into
\&      another programs (i.e. CLUSTAL, HMMER, etc.).
.Ve
.SH "FEEDBACK"
.IX Header "FEEDBACK"
.SS "Mailing Lists"
.IX Subsection "Mailing Lists"
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list.  Your participation is much appreciated.
.PP
.Vb 2
\&  bioperl\-l@bioperl.org                  \- General discussion
\&  http://bioperl.org/wiki/Mailing_lists  \- About the mailing lists
.Ve
.SS "Reporting Bugs"
.IX Subsection "Reporting Bugs"
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
.PP
.Vb 1
\&  https://github.com/bioperl/bioperl\-live/issues
.Ve
.SH "AUTHORS"
.IX Header "AUTHORS"
.Vb 3
\&  Ewan Birney E<lt>birney\-at\-ebi.ac.ukE<gt>
\&  Mauricio Herrera Cuadra E<lt>mauricio at intelligenomes.comE<gt>
\&  (some enhancements)
.Ve