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.\" ========================================================================
.\"
.IX Title "BP_MUTATE 1p"
.TH BP_MUTATE 1p "2021-08-15" "perl v5.32.1" "User Contributed Perl Documentation"
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.SH "NAME"
bp_mutate.pl \- randomly mutagenize a single protein or DNA sequence
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
.Vb 1
\&  ./bp_mutate.pl \-p 25 \-i test.fa \-n 5 \-f swiss \-o muts.swiss
\&
\&  #or
\&
\&  ./bp_mutate.pl \-\-percent=25 \-\-input=test.fa \-\-number=5 \-output=x.fa
.Ve
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
Randomly mutagenize a single protein or \s-1DNA\s0 sequence one or more times.
Specify percentage mutated and number of resulting mutant sequences.
Print mutagenized sequences to \s-1STDOUT\s0 or write to an output file.
.PP
.Vb 6
\&  \-h|\-\-help    Help
\&  \-p|\-\-percent Percent mutagenized
\&  \-n|\-\-number  Number of mutant sequences created
\&  \-o|\-\-output  Output file (optional)
\&  \-f|\-\-format  Output format (default: fasta)
\&  \-i|\-\-input   Input file
.Ve
.SH "FEEDBACK"
.IX Header "FEEDBACK"
User feedback is an integral part of the evolution of this and other
Bioperl scripts. Send your comments and suggestions to the Bioperl 
mailing list.  Your participation is much appreciated.
.PP
.Vb 2
\&  bioperl\-l@bioperl.org                  \- General discussion
\&  http://bioperl.org/wiki/Mailing_lists  \- About the mailing lists
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.SS "Reporting Bugs"
.IX Subsection "Reporting Bugs"
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
.PP
.Vb 1
\&  https://github.com/bioperl/bioperl\-live/issues
.Ve
.SH "AUTHOR"
.IX Header "AUTHOR"
Brian Osborne, bosborne at alum.mit.edu