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.IX Title "BP_MAKE_MRNA_PROTEIN 1p"
.TH BP_MAKE_MRNA_PROTEIN 1p "2021-08-15" "perl v5.32.1" "User Contributed Perl Documentation"
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.SH "NAME"
bp_make_mrna_protein \- Convert an input mRNA/cDNA sequence into protein
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
Convert an input mRNA/cDNA sequence into protein using \fBtranslate()\fR
.PP
.Vb 1
\&  \-f/\-\-frame           Specifies frame [0,1,2]
.Ve
.PP
One can also specify:
.PP
.Vb 9
\&  \-t/\-\-terminator      Stop Codon character (defaults to \*(Aq*\*(Aq)
\&  \-u/\-\-unknown         Unknown Protein character (defaults to \*(AqX\*(Aq)
\&  \-cds/\-\-fullcds       Expected Full CDS (with start and Stop codon)
\&  \-throwOnError        Throw error if no Full CDS (defaults to 0)
\&  \-if/\-\-format         Input format (defaults to FASTA/Pearson)
\&  \-of/\-\-format         Output format (defaults to FASTA/Pearson)
\&  \-o/\-\-output          Output Filename (defaults to STDOUT)
\&  \-i/\-\-input           Input Filename (defaults to STDIN)
\&  \-ct/\-\-codontable     Codon table to use (defaults to \*(Aq1\*(Aq)
.Ve
.PP
See Bio::PrimarySeq for more information on codon tables
and the \fBtranslate()\fR method
.SH "AUTHOR \- Jason Stajich"
.IX Header "AUTHOR - Jason Stajich"
.Vb 1
\&  Email jason\-at\-bioperl\-dot\-org
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