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.IX Title "TRADIS_GENE_INSERT_SITES 1p"
.TH TRADIS_GENE_INSERT_SITES 1p 2024-01-25 "perl v5.38.2" "User Contributed Perl Documentation"
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.SH NAME
tradis_gene_insert_sites \- Generate insertion site details from TraDIS pipeline plots
.SH VERSION
.IX Header "VERSION"
version 1.4.5
.SH SYNOPSIS
.IX Header "SYNOPSIS"
.SH DESCRIPTION
.IX Header "DESCRIPTION"
This script is for TRADIS analysis. It takes in a plot file created by the TRADIS pathogen informatics pipeline, and an embl file of
annotation.
It then outputs a tab delimited file with the insert site details. This is then used as input to an R script to calculate essentialit
y.
.SH NAME
tradis_gene_insert_sites.pl
.SH CONTACT
.IX Header "CONTACT"
path\-help@sanger.ac.uk
Original author: Lars Barquist
.SH METHODS
.IX Header "METHODS"
.SH AUTHOR
.IX Header "AUTHOR"
Carla Cummins <path\-help@sanger.ac.uk>
.SH "COPYRIGHT AND LICENSE"
.IX Header "COPYRIGHT AND LICENSE"
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
.PP
This is free software, licensed under:
.PP
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\&  The GNU General Public License, Version 3, June 2007
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