table of contents
TRADIS_COMPARISON(1) | User Commands | TRADIS_COMPARISON(1) |
NAME¶
tradis_comparison - bio-tradis: compares two experimental conditions using the method of Dembek et al.
SYNOPSIS¶
tradis_comparison [-h] [-f] [-t read cutoff] [-o outputfile.csv] [-p outputplot.pdf] --controls controls.txt --conditions conditions.txt
DESCRIPTION¶
Compares two experimental conditions using the method of Dembek et al. mBio 2015. Read counts per gene are compared using edgeR. This analysis requires experimental replicates.
OPTIONS¶
Required Arguments:¶
- --controls
- control libraries, generally growth in a permissive condition
- --conditions
- libraries exposed to the experimental condition being compared
Optional Arguments:¶
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
March 2017 | tradis_comparison 1.3.1 |