.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH FILTER_TRADIS_TAGS "1" "March 2017" "filter_tradis_tags 1.3.1" "User Commands"
.SH NAME
filter_tradis_tags \- bio-tradis: filters a BAM file and outputs reads
.SH SYNOPSIS
.B filter_tags
\fI\,-b file.bam -t tag \/\fR[\fI\,options\/\fR]
.SH DESCRIPTION
Filters a BAM file and outputs reads with tag matching \fB\-t\fR option
.SH OPTIONS
.TP
\fB\-f\fR
fastq file with tradis tags attached
.TP
\fB\-t\fR
tag to search for
.TP
\fB\-m\fR
number of mismatches to allow when matching tag (optional. default = 0)
.TP
\fB\-o\fR
output file name (optional. default: <file>.tag.fastq)
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.