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trees-distances(1) trees-distances(1)

NAME

trees-distances - Compute autocorrelations or other functions of tree distances.

SYNOPSIS

trees-distances analysis trees-file1 [trees-file2 ...]

DESCRIPTION

Compute autocorrelations or other functions of tree distances.

INPUT OPTIONS:

produce help message
number of tree samples to skip
Read until this number of trees.
Thin tree samples down to this number of trees.
factor by which to subsample
Output more log messages on stderr.

ANALYSIS OPTIONS:

Analysis: matrix, autocorrelation, diameter, compare, convergence, converged.
Tree distance: topology, branch, internal-branch.
[matrix]: disallow zero distances between points.
[autocorrelation]: max lag to consider.
Confidence interval size.
Comma-separated quantiles of distance required for converged? (smaller is more strict).
Show mean and standard deviation
Show median and confidence interval
Show minimum and maximum distances
Show minimum and maximum distances
Show minimum and maximum distances
Amount of noise to add to distances

REPORTING BUGS:

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

Benjamin Redelings.

Feb 2018