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tree-tool(1) tree-tool(1)

NAME

tree-tool - Perform various operations on Newick trees.

SYNOPSIS

tree-tool tree-file [OPTIONS]

DESCRIPTION

Perform various operations on Newick trees.

GENERAL OPTIONS:

-h, --help
produce help message
-V, --verbose
Output more log messages on stderr.

MODIFICATION OPTIONS:

--prune arg
Comma-separated taxa to remove
--resolve
Comma-separated taxa to remove
--remove-root-branch
Remove single branch from root.
--remove-root-branches
Ensure root is not a tip.
--remove-knuckles
Remove degree-2 nodes.
--scale arg
Scale branch-lengths by factor
--strip-internal-names
Remove internal node names
--name-all-nodes
Add node names

OUTPUT OPTIONS:

--length
Report the total tree length
--diameter
Report the total tree length

REPORTING BUGS:

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

Benjamin Redelings.
Feb 2018